OBO Foundry dashboard analysis¶

Back to dashboard main page
/tmp/ipykernel_482/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    3
unknown           1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 3 3239.25 5609.043137 0.0 1.50 679.5 3917.25 11598.0
Declaration 3 625.25 991.889569 0.0 1.50 208.5 832.25 2084.0
EquivalentClasses 3 50.00 78.277285 0.0 0.75 17.5 66.75 165.0
ObjectPropertyDomain 2 17.00 32.680269 0.0 0.00 1.0 18.00 66.0
AsymmetricObjectProperty 2 2.25 3.304038 0.0 0.00 1.0 3.25 7.0
DataPropertyDomain 2 1.75 2.362908 0.0 0.00 1.0 2.75 5.0
DataPropertyRange 2 1.50 1.914854 0.0 0.00 1.0 2.50 4.0
DisjointClasses 2 6.25 11.842719 0.0 0.00 0.5 6.75 24.0
SubObjectPropertyOf 2 57.00 110.691764 0.0 0.00 2.5 59.50 223.0
SubClassOf 2 595.75 936.624569 0.0 0.00 206.5 802.25 1970.0
ObjectPropertyRange 2 16.50 31.680699 0.0 0.00 1.0 17.50 64.0
SymmetricObjectProperty 1 0.75 1.500000 0.0 0.00 0.0 0.75 3.0
SubPropertyChainOf 1 18.25 36.500000 0.0 0.00 0.0 18.25 73.0
SubAnnotationPropertyOf 1 4.75 9.500000 0.0 0.00 0.0 4.75 19.0
Rule 1 6.25 12.500000 0.0 0.00 0.0 6.25 25.0
ReflexiveObjectProperty 1 0.75 1.500000 0.0 0.00 0.0 0.75 3.0
InverseFunctionalObjectProperty 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
IrrefexiveObjectProperty 1 2.25 4.500000 0.0 0.00 0.0 2.25 9.0
InverseObjectProperties 1 10.25 20.500000 0.0 0.00 0.0 10.25 41.0
AnnotationPropertyRangeOf 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
FunctionalObjectProperty 1 1.25 2.500000 0.0 0.00 0.0 1.25 5.0
FunctionalDataProperty 1 1.00 2.000000 0.0 0.00 0.0 1.00 4.0
EquivalentObjectProperties 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
DifferentIndividuals 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
ClassAssertion 1 6.50 13.000000 0.0 0.00 0.0 6.50 26.0
TransitiveObjectProperty 1 4.75 9.500000 0.0 0.00 0.0 4.75 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 3 1996.25 3145.730797 0.0 2.25 685.0 2679.00 6615.0
ObjectSomeValuesFrom 3 239.00 341.103112 0.0 0.75 116.0 354.25 724.0
ObjectAllValuesFrom 2 18.25 25.011664 0.0 0.00 10.0 28.25 53.0
ObjectComplementOf 2 11.25 17.036725 0.0 0.00 4.5 15.75 36.0
ObjectExactCardinality 2 2.50 4.358899 0.0 0.00 0.5 3.00 9.0
ObjectIntersectionOf 2 118.75 183.039841 0.0 0.00 44.5 163.25 386.0
ObjectMinCardinality 2 2.00 2.828427 0.0 0.00 1.0 3.00 6.0
ObjectUnionOf 2 10.25 13.326040 0.0 0.00 6.5 16.75 28.0
DataExactCardinality 1 1.50 3.000000 0.0 0.00 0.0 1.50 6.0
DataMinCardinality 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
ObjectHasSelf 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
ObjectHasValue 1 1.75 3.500000 0.0 0.00 0.0 1.75 7.0
ObjectOneOf 1 0.75 1.500000 0.0 0.00 0.0 0.75 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
0 apollo_sv 0.503 0.882 0.25
2 omrse 0.485 0.838 0.25
3 tmp 0.113 0.282 0.00
1 dron 0.000 0.000 0.00

OBO Score Summary

count mean std min 25% 50% 75% max
score 4.0 0.27525 0.256874 0.0 0.08475 0.299 0.4895 0.503
score_dash 4.0 0.50050 0.431158 0.0 0.21150 0.560 0.8490 0.882
score_impact 4.0 0.12500 0.144338 0.0 0.00000 0.125 0.2500 0.250

OBO dependency graph